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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
395
DNA binding
193
Transcription
23
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
50
December, 2017
November, 2018
42
August, 2017
40
May, 2022
30
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
555
bigWig
525
bam
388
bed narrowPeak
335
fastq
305
bigBed narrowPeak
174
tsv
58
bed broadPeak
58
bigBed broadPeak
58
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
627
Homo sapiens
Biosample type
307
tissue
295
cell line
14
in vitro differentiated cells
11
primary cell
Organ
880
pancreas
640
connective tissue
627
liver
475
epithelium
465
adipose tissue
343
heart
261
kidney
223
brain
203
vasculature
200
blood vessel
159
bone element
128
artery
69
limb
57
musculature of body
56
eye
51
blood
51
bodily fluid
30
embryo
30
nerve
20
lung
18
vein
16
skeleton
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
627
AMP
Genome assembly (visualization)
560
hg19
476
GRCh38
Lab
560
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
ibed
month_released!
November, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
627 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
98
167
20
1
3
1
1
1
1
right lobe of liver
7
3
1
1
2
cell line
HepG2
273
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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