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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
24
ChIP-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
14
DNA accessibility
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
11
August, 2017
10
July, 2019
10
June, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
35
bed narrowPeak
35
bigWig
32
bam
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
Organism
64
Homo sapiens
Biosample type
51
tissue
13
primary cell
Organ
919
pancreas
699
liver
653
connective tissue
498
epithelium
481
adipose tissue
357
heart
219
vasculature
215
blood vessel
209
kidney
159
bone element
136
brain
131
artery
86
limb
69
blood
69
bodily fluid
57
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
39
hg19
28
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
tagAlign
xls
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
1
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
1
+ See 12 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
See all biosamples
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