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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
35
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
54
Homo sapiens
Biosample type
43
tissue
11
primary cell
Organ
605
liver
504
pancreas
322
epithelium
228
kidney
193
connective tissue
189
heart
143
brain
114
vasculature
110
blood vessel
101
bone element
87
adipose tissue
69
blood
69
bodily fluid
55
artery
54
musculature of body
31
eye
23
embryo
23
spleen
19
lung
18
limb
16
skeleton
1
bone marrow
1
pericardium
thymus
1
vein
Project
54
AMP
Genome assembly (visualization)
34
hg19
14
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
tsv
month_released!
October, 2019
organ_slims!
thymus
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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