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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
7
ATAC-seq
6
WGBS
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
73
DNA binding
7
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
2
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
440
bam
423
bigWig
tsv
43
fastq
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
88
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
195
heart
157
vasculature
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
89
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
files.file_type!
tsv
organ_slims!
ovary
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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