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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1282total RNA-seq
  • DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 1406Transcription
  • 180DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 278August, 2017
  • 277May, 2021
  • 242October, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 82July, 2019
  • 79April, 2019
  • 78November, 2018
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 31June, 2019
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3183bam
  • 2960bigWig
  • 1608bed narrowPeak
  • 1600tsv
  • 1346fastq
  • 833bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 116bed broadPeak
  • 79bigBed broadPeak
  • 69bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3176Homo sapiens
Biosample type
  • 1730tissue
  • 580cell line
  • 580primary cell
  • 290in vitro differentiated cells
  • 3stem cell
Organ
  • 681pancreas
  • 676liver
  • 584connective tissue
  • 440adipose tissue
  • 300epithelium
  • 211brain
  • 181heart
  • 174vasculature
  • 171blood vessel
  • 98artery
  • 78limb
  • 66bone element
  • 65kidney
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 36embryo
  • 24musculature of body
  • 23spleen
  • 18vein
  • 8skeleton
  • 3eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2997AMP
  • 186T1D
Genome assembly (visualization)
  • 2812hg19
  • 2752GRCh38
Lab
  • 2978AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 208inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

3183 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans302663861
liver1221471
bone tissue58
body of pancreas352422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc113
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
cardiomyocytes359
adipocyte534
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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