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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
ChIP-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
4
DNA binding
Target of assay
4
control
Date released
December, 2017
4
February, 2023
2
August, 2017
2
August, 2021
2
February, 2021
2
September, 2017
1
May, 2022
Available data
3089
bam
bigWig
1600
tsv
1536
bed narrowPeak
1252
fastq
783
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
64
xls
54
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
7
in vitro differentiated cells
4
tissue
1
cell line
1
primary cell
Organ
8
connective tissue
2
liver
2
pancreas
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
13
hg19
4
GRCh38
Lab
11
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
bigWig
month_released!
December, 2017
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
ChIP-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
islet of Langerhans
2
liver
1
skeletal muscle tissue
1
cell line
HepG2
1
primary cell
osteoblast
1
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