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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
5
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
control
Date released
3
August, 2021
2
August, 2017
1
February, 2021
1
July, 2019
Available data
604
bigWig
575
bam
436
bed narrowPeak
385
fastq
353
bigBed narrowPeak
174
tsv
58
bed broadPeak
58
bigBed broadPeak
58
tagAlign
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
Organ
20
pancreas
18
connective tissue
7
liver
5
epithelium
4
adipose tissue
3
brain
2
blood vessel
2
embryo
2
vasculature
1
musculature of body
Project
7
AMP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
7
AMP-T2D consortium
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
endothelial cell of hepatic sinusoid
1
tissue
liver
2
cell line
HepG2
1
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