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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
28
ChIP-seq
15
RRBS
8
WGBS
Assay category
28
DNA binding
23
DNA methylation
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
23
July, 2019
20
August, 2017
6
November, 2017
2
October, 2019
Available data
2906
bam
2657
bigWig
1475
bed narrowPeak
1427
tsv
fastq
833
bigBed narrowPeak
308
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
67
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
51
Homo sapiens
Biosample type
40
tissue
11
primary cell
Organ
15
musculature of body
8
brain
8
epithelium
8
heart
8
pancreas
4
kidney
4
vasculature
3
blood vessel
2
connective tissue
2
vein
1
adipose tissue
1
eye
1
limb
1
liver
1
pericardium
Project
51
AMP
Genome assembly (visualization)
43
hg19
13
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
fastq
month_released!
May, 2021
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
RRBS
WGBS
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
heart left ventricle
1
2
cingulate gyrus
2
heart right ventricle
2
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 5 more…
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