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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
DNase-seq
1
ATAC-seq
Assay category
114
DNA binding
1
DNA accessibility
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
4
October, 2017
2
October, 2019
March, 2019
Available data
3182
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1345
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
115
bed broadPeak
79
bigBed broadPeak
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
109
Homo sapiens
Biosample type
58
cell line
36
tissue
21
primary cell
Organ
58
liver
15
brain
13
musculature of body
13
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
115
AMP
Genome assembly (visualization)
115
hg19
77
GRCh38
Lab
114
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
bed bed3+
month_released!
March, 2019
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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