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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
99
ChIP-seq
1
ATAC-seq
Assay category
99
DNA binding
1
DNA accessibility
Target of assay
53
histone
53
histone modification
46
transcription factor
32
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
39
August, 2017
2
October, 2019
March, 2019
1
October, 2017
Available data
2971
bam
2770
bigWig
1574
tsv
1437
bed narrowPeak
1326
fastq
738
bigBed narrowPeak
280
tagAlign
161
txt
153
zippedFastqFolder
100
bed broadPeak
73
bigBed broadPeak
66
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
22
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
vcf
Organism
94
Homo sapiens
Biosample type
58
cell line
27
tissue
15
primary cell
Organ
58
liver
brain
13
musculature of body
13
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
100
AMP
Genome assembly (visualization)
100
hg19
63
GRCh38
Lab
99
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
DNase-seq
month_released!
March, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
pancreas
6
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
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