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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • DNase-seq
  • 114ChIP-seq
  • 2ATAC-seq
Assay category
  • 114DNA binding
  • 2DNA accessibility
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 70November, 2017
  • 39August, 2017
  • 4October, 2017
  • 2October, 2019
  • 1March, 2019
Available data
  • 3183bam
  • 2960bigWig
  • 1608bed narrowPeak
  • 1600tsv
  • 1346fastq
  • 833bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 116bed broadPeak
  • 79bigBed broadPeak
  • 69bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 110Homo sapiens
Biosample type
  • 58cell line
  • 37tissue
  • 21primary cell
Organ
  • 58liver
  • 15brain
  • 14pancreas
  • 13musculature of body
  • 6epithelium
  • 6vasculature
  • 4blood vessel
  • 2vein
  • 1adipose tissue
  • 1connective tissue
Project
  • 116AMP
Genome assembly (visualization)
  • 115hg19
  • 77GRCh38
Lab
  • 114AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

116 results

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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG258
tissue
skeletal muscle tissue13
islet of Langerhans62
pancreas6
brain3
cingulate gyrus2
primary cell
skeletal muscle myoblast13
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
endothelial cell of umbilical vein2
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