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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
16
ChIP-seq
Assay category
151
DNA accessibility
16
DNA binding
Target of assay
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
77
August, 2021
65
February, 2023
20
May, 2022
5
May, 2024
Available data
bam
2092
bigWig
1600
tsv
1117
fastq
758
bed narrowPeak
442
bigBed narrowPeak
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
51
bed broadPeak
49
bigBed broadPeak
44
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
167
Homo sapiens
Biosample type
152
tissue
11
cell line
4
in vitro differentiated cells
Organ
64
kidney
40
heart
35
artery
35
blood vessel
35
vasculature
31
liver
27
eye
12
epithelium
3
connective tissue
1
adipose tissue
Project
167
AMP
Genome assembly (visualization)
104
GRCh38
63
hg19
Lab
64
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
bam
target.investigated_as!
histone
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
+ See 2 more…
cell line
HepG2
11
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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