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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
76
ChIP-seq
Assay category
76
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
63
November, 2017
13
August, 2017
Available data
3160
bam
2942
bigWig
1600
tsv
1592
bed narrowPeak
1341
fastq
817
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
113
bed broadPeak
76
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
76
Homo sapiens
Biosample type
57
cell line
19
primary cell
Organ
57
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
Project
76
AMP
Genome assembly (visualization)
76
hg19
61
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
bedpe bed3+
organ_slims!
vein
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
cell line
HepG2
57
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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