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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
30
ChIP-seq
5
Hi-C
Assay category
30
DNA binding
5
3D chromatin structure
Target of assay
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
17
November, 2017
11
August, 2017
4
July, 2019
3
October, 2019
Available data
2625
bam
2404
bigWig
1600
tsv
1079
bed narrowPeak
892
fastq
389
tagAlign
369
bigBed narrowPeak
161
txt
153
zippedFastqFolder
67
bed broadPeak
64
xls
50
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
30
bigBed broadPeak
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
35
Homo sapiens
Biosample type
20
primary cell
15
cell line
Organ
15
liver
6
brain
6
epithelium
6
vasculature
5
blood vessel
2
vein
1
connective tissue
1
pancreas
Project
35
AMP
Genome assembly (visualization)
35
hg19
27
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_title!
DNase-seq
month_released!
April, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
primary cell
skeletal muscle myoblast
11
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
brain pericyte
1
+ See 2 more…
cell line
HepG2
14
Panc1
1
See all biosamples
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