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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
82
ChIP-seq
1
FAIRE-seq
Assay category
82
DNA binding
1
DNA accessibility
Target of assay
52
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
10
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
67
November, 2017
13
August, 2017
3
October, 2019
Available data
3183
bam
2955
bigWig
1604
bed narrowPeak
1600
tsv
1346
fastq
833
bigBed narrowPeak
398
tagAlign
158
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
67
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
83
Homo sapiens
Biosample type
61
cell line
22
primary cell
Organ
61
liver
7
epithelium
7
vasculature
6
brain
5
blood vessel
3
vein
Project
83
AMP
Genome assembly (visualization)
83
hg19
62
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
lab.title!
Maike Sander, UCSD
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
FAIRE-seq
cell line
HepG2
61
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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