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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 801ChIP-seq
  • DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 801DNA binding
  • 32DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 97May, 2019
  • 64April, 2019
  • 64November, 2018
  • 62October, 2019
  • 50December, 2017
  • 45October, 2018
  • 38August, 2017
  • 30December, 2018
  • 23June, 2019
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
Available data
  • 3183bam
  • 2960bigWig
  • 1608bed narrowPeak
  • 1600tsv
  • 1346fastq
  • 833bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 116bed broadPeak
  • 79bigBed broadPeak
  • 69bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 827Homo sapiens
Biosample type
  • 384tissue
  • 353cell line
  • 80primary cell
  • 16in vitro differentiated cells
Organ
  • 353liver
  • 95brain
  • 83pancreas
  • 72vasculature
  • 70blood vessel
  • 64heart
  • 59epithelium
  • 54blood
  • 54bodily fluid
  • 48limb
  • 25kidney
  • 24nerve
  • 21artery
  • 19connective tissue
  • 14musculature of body
  • 12spleen
  • 11vein
  • 8adipose tissue
  • 2eye
Project
  • 833AMP
Genome assembly (visualization)
  • 791GRCh38
  • 777hg19
Lab
  • 833AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 20inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

833 results

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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver38
heart left ventricle28
body of pancreas26
tibial nerve24
kidney181
cell line
HepG2293
GM1287854
Panc16
primary cell
skeletal muscle myoblast14
endothelial cell of umbilical vein101
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
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