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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
512
ChIP-seq
5
total RNA-seq
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
512
DNA binding
5
Transcription
3
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
378
transcription factor
83
control
82
recombinant protein
67
RNA binding protein
46
histone modification
45
histone
33
chromatin remodeller
25
broad histone mark
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
65
November, 2018
63
December, 2017
28
August, 2017
28
December, 2018
23
January, 2019
Available data
736
bam
672
bigWig
522
fastq
490
bed narrowPeak
407
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
522
Homo sapiens
Biosample type
427
cell line
80
tissue
15
in vitro differentiated cells
Organ
468
pancreas
462
liver
257
epithelium
98
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
23
spleen
19
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
522
AMP
Genome assembly (visualization)
441
hg19
394
GRCh38
Lab
522
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
522 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
GM12878
60
tissue
liver
67
1
1
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
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