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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
172
Transcription
1
DNA sequencing
Date released
144
May, 2020
10
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
October, 2019
Available data
676
bam
617
bigWig
462
fastq
436
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
175
Homo sapiens
Biosample type
154
tissue
16
cell line
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
175
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
162
GRCh38
162
hg19
Lab
165
AMP-T2D consortium
10
Bing Ren, UCSD
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
175 results
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Clear Filters
total RNA-seq
small RNA-seq
pCHi-C
whole genome sequencing assay
tissue
liver
147
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
1
primary cell
hepatocyte
5
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