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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 249ChIP-seq
  • DNase-seq
  • 4RRBS
Assay category
  • 249DNA binding
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 68August, 2017
  • 26December, 2017
  • 22February, 2018
  • 9October, 2017
  • 7November, 2018
  • 6September, 2017
  • 1January, 2019
Available data
  • 253fastq
  • 247bam
  • 204bigWig
  • 189bed narrowPeak
  • 137bigBed narrowPeak
  • 82bed broadPeak
  • 73bigBed broadPeak
  • 39tagAlign
  • 28bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 246Homo sapiens
Biosample type
  • 113cell line
  • 48tissue
  • 47primary cell
  • 43in vitro differentiated cells
  • 2stem cell
Organ
  • 119liver
  • 50pancreas
  • 31epithelium
  • 18brain
  • 18embryo
  • 6vasculature
  • 3blood vessel
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
Project
  • 253AMP
Genome assembly (visualization)
  • 215hg19
  • 180GRCh38
Lab
  • 253AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

253 results

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Clear Filters
ChIP-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
pancreas10
brain9
liver61
adipose tissue2
primary cell
skeletal muscle myoblast151
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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