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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
DNase-seq
4
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
31
February, 2023
21
October, 2019
2
June, 2019
1
February, 2020
1
July, 2019
Available data
28
bed narrowPeak
5
tsv
2
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
Organism
56
Homo sapiens
Biosample type
53
tissue
3
primary cell
Organ
915
pancreas
635
connective tissue
496
epithelium
472
adipose tissue
427
liver
346
heart
261
kidney
251
brain
216
vasculature
213
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
20
vein
18
blood
18
bodily fluid
18
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
56
AMP-T2D consortium
assay_title!
DNase-seq
lab.title!
Bing Ren, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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