Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
67
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
67
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
79
bam
57
bed narrowPeak
56
bigWig
48
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
88
Homo sapiens
Biosample type
88
tissue
Organ
937
pancreas
785
liver
671
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
88
AMP-T2D consortium
assay_title!
DNase-seq
lab.title!
Maike Sander, UCSD
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
88 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
1
+ See 7 more…
See all biosamples
Download