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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
12
Transcription
5
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
33
May, 2019
33
October, 2019
8
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
2
November, 2017
Available data
74
bam
57
bigWig
47
bed narrowPeak
45
bigBed narrowPeak
13
tsv
3
bed broadPeak
3
bigBed broadPeak
3
hic
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
88
Homo sapiens
Biosample type
70
tissue
18
primary cell
Organ
864
pancreas
725
liver
642
connective tissue
477
adipose tissue
456
epithelium
heart
258
kidney
199
vasculature
196
blood vessel
159
bone element
137
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
50
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
59
hg19
51
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
lab.title!
Stephen Parker, UMich
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
19
1
1
aorta
9
4
1
1
2
1
thoracic aorta
12
2
1
ascending aorta
12
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
11
2
1
brain microvascular endothelial cell
2
1
endothelial cell of hepatic sinusoid
1
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