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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
160
total RNA-seq
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
164
Transcription
7
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
50
November, 2018
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
672
bam
580
bigWig
462
fastq
399
bed narrowPeak
353
bigBed narrowPeak
165
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
710
Homo sapiens
Biosample type
370
cell line
317
tissue
15
in vitro differentiated cells
8
primary cell
Organ
830
pancreas
710
liver
670
connective tissue
488
adipose tissue
419
epithelium
271
heart
254
brain
219
vasculature
215
blood vessel
159
bone element
143
kidney
135
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
57
eye
41
nerve
29
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
710
AMP
Genome assembly (visualization)
582
hg19
523
GRCh38
Lab
710
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
lab.title!
Struan F.A. Grant, CHOP
month_released!
August, 2021
May, 2022
BIOSAMPLE
ASSAY
710 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
2
tissue
liver
145
147
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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