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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
93
single cell RNA-seq
DNase-seq
17
total RNA-seq
8
WGBS
4
pCHi-C
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
127
DNA binding
111
Transcription
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
99
histone
99
histone modification
57
broad histone mark
42
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
22
July, 2019
16
May, 2019
12
October, 2019
8
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
132
bigWig
114
tsv
110
bed narrowPeak
107
bam
61
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
258
Homo sapiens
Biosample type
249
tissue
8
primary cell
1
in vitro differentiated cells
Organ
935
pancreas
785
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
258
AMP
Genome assembly (visualization)
131
GRCh38
91
hg19
Lab
218
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_title!
DNase-seq
month_released!
August, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
258 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
1
2
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
1
+ See 11 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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