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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
10
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
13
Transcription
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
54
bam
43
fastq
37
bigWig
13
tsv
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
100
Homo sapiens
Biosample type
98
tissue
2
primary cell
1
in vitro differentiated cells
Organ
905
pancreas
781
liver
473
epithelium
294
heart
265
kidney
242
brain
218
connective tissue
156
vasculature
152
blood vessel
101
adipose tissue
77
limb
69
artery
69
blood
69
bodily fluid
61
musculature of body
56
eye
nerve
37
embryo
24
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
38
hg19
36
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
month_released!
February, 2020
February, 2021
organ_slims!
nerve
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
4
1
1
1
omental fat pad
11
4
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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