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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
DNase-seq
17
total RNA-seq
5
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
235
DNA binding
24
Transcription
5
3D chromatin structure
5
DNA accessibility
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
105
October, 2019
91
November, 2017
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
February, 2023
Available data
229
bam
203
bigWig
182
bed narrowPeak
118
tagAlign
106
bigBed narrowPeak
26
tsv
19
fastq
17
bed broadPeak
8
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
273
Homo sapiens
Biosample type
237
tissue
36
primary cell
Organ
882
pancreas
785
liver
661
connective tissue
488
adipose tissue
453
epithelium
327
heart
273
kidney
253
brain
190
vasculature
186
blood vessel
151
bone element
102
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
41
nerve
37
embryo
26
eye
24
spleen
20
lung
20
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
273
AMP
Genome assembly (visualization)
195
GRCh38
156
hg19
Lab
273
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
month_released!
February, 2023
March, 2023
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
endothelial cell of umbilical vein
17
2
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
+ See 2 more…
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