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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
421
bigWig
401
tsv
42
fastq
8
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
Organism
455
Homo sapiens
Biosample type
453
tissue
2
primary cell
1
in vitro differentiated cells
Organ
731
pancreas
683
liver
583
connective tissue
456
adipose tissue
360
epithelium
243
kidney
230
heart
151
bone element
119
vasculature
116
blood vessel
82
artery
68
blood
68
bodily fluid
66
brain
37
limb
30
musculature of body
25
embryo
23
eye
20
lung
18
spleen
17
nerve
8
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
456
AMP
Genome assembly (visualization)
421
GRCh38
421
hg19
Lab
456
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
month_released!
February, 2023
organ_slims!
ovary
target.investigated_as!
histone
BIOSAMPLE
ASSAY
456 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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