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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
Assay category
7
DNA binding
6
DNA accessibility
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
14
bam
12
bed narrowPeak
7
bigWig
6
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
921
pancreas
778
liver
671
connective tissue
488
adipose tissue
475
epithelium
355
heart
246
kidney
182
vasculature
178
blood vessel
168
brain
159
bone element
113
artery
69
blood
69
bodily fluid
63
musculature of body
37
embryo
36
eye
24
spleen
21
limb
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
0
skin of body
Project
21
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
21
AMP-T2D consortium
assay_title!
DNase-seq
month_released!
October, 2019
organ_slims!
lung
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg
7
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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