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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
38
ATAC-seq
20
total RNA-seq
19
ChIP-seq
2
Hi-C
Assay category
67
Transcription
38
DNA accessibility
19
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
8
control
6
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
70
bam
43
bigWig
42
bed narrowPeak
20
tsv
18
fastq
5
bigBed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
126
Homo sapiens
Biosample type
93
tissue
16
cell line
12
primary cell
5
in vitro differentiated cells
Organ
73
pancreas
47
kidney
28
epithelium
1
adipose tissue
1
connective tissue
Project
72
AMP
47
KPMP
7
HPAP
Genome assembly (visualization)
71
GRCh38
66
hg19
Lab
72
AMP-T2D consortium
47
KPMP
7
Klaus Kaestner, Upenn
Audit category:
22
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
126 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
kidney
47
islet of Langerhans
19
19
6
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
4
pancreatic acinar cell
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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