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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
188
DNA binding
185
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
119
histone
119
histone modification
71
broad histone mark
48
narrow histone mark
39
control
30
transcription factor
12
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
224
bed narrowPeak
199
bam
170
bigWig
128
tsv
118
bigBed narrowPeak
64
xls
57
txt
30
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
468
Homo sapiens
Biosample type
351
tissue
67
cell line
42
in vitro differentiated cells
9
primary cell
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
40
liver
28
brain
18
blood
18
bodily fluid
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
7
spleen
6
pancreas
5
connective tissue
1
adipose tissue
Project
469
AMP
Genome assembly (visualization)
227
GRCh38
183
hg19
Lab
301
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
469 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 21 more…
cell line
HepG2
18
14
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
kidney epithelial cell
5
hepatocyte
4
See all biosamples
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