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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
471
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
308
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
38
narrow histone mark
22
chromatin remodeller
other context
5
other post-translational modification
Date released
715
February, 2021
406
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
465
bam
400
bigWig
398
fastq
372
bed narrowPeak
371
bigBed narrowPeak
78
tagAlign
69
bed broadPeak
63
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
480
Homo sapiens
Biosample type
374
cell line
96
tissue
10
primary cell
Organ
363
liver
91
brain
15
blood
15
bodily fluid
6
epithelium
6
vasculature
5
pancreas
5
spleen
3
blood vessel
Project
480
AMP
Genome assembly (visualization)
345
GRCh38
338
hg19
Lab
480
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
month_released!
December, 2019
target.investigated_as!
other context
BIOSAMPLE
ASSAY
480 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
358
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 5 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
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