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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
58
ATAC-seq
35
ChIP-seq
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
58
DNA accessibility
35
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
216
February, 2021
43
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
May, 2021
Available data
165
bam
140
bigWig
116
tsv
88
txt
79
bed narrowPeak
21
bigBed narrowPeak
7
tagAlign
4
bed bed3
Organism
298
Homo sapiens
Biosample type
229
tissue
66
cell line
3
primary cell
Organ
933
pancreas
785
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
297
AMP
1
T1D
Genome assembly (visualization)
191
GRCh38
160
hg19
Lab
297
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
DNase-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
298 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
36
5
tibial artery
1
1
23
acetabular part of hip bone
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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