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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
33
ChIP-seq
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
45
DNA accessibility
33
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
28
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
93
bam
76
bigWig
65
bed narrowPeak
59
tsv
20
bigBed narrowPeak
2
tagAlign
Organism
137
Homo sapiens
Biosample type
73
tissue
62
cell line
2
primary cell
Organ
919
pancreas
635
connective tissue
496
epithelium
472
adipose tissue
447
liver
346
heart
263
kidney
251
brain
216
vasculature
213
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
20
vein
18
blood
18
bodily fluid
18
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
119
GRCh38
84
hg19
Lab
137
AMP-T2D consortium
assay_title!
DNase-seq
organ_slims!
bone marrow
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
4
tibial artery
1
1
23
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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