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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
49
ChIP-seq
46
ATAC-seq
DNase-seq
2
single cell RNA-seq
Assay category
63
Transcription
49
DNA binding
46
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
48
October, 2019
35
February, 2023
3
February, 2020
3
July, 2019
3
May, 2019
2
August, 2021
Available data
118
bam
110
bigWig
95
bed narrowPeak
63
tsv
45
bigBed narrowPeak
4
tagAlign
Organism
158
Homo sapiens
Biosample type
92
tissue
64
cell line
2
primary cell
Organ
878
pancreas
677
liver
639
connective tissue
474
epithelium
464
adipose tissue
343
heart
261
kidney
223
brain
203
vasculature
200
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
19
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
153
GRCh38
118
hg19
Lab
158
AMP-T2D consortium
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
158 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
coronary artery
1
3
36
tibial nerve
5
24
1
tibial artery
1
18
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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