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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
2
ATAC-seq
2
WGBS
2
pCHi-C
DNase-seq
Assay category
80
DNA binding
20
DNA accessibility
9
Transcription
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
23
November, 2018
19
April, 2020
8
January, 2021
2
March, 2020
1
January, 2018
1
October, 2017
Available data
83
bam
83
fastq
70
bigWig
67
bed narrowPeak
66
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
Organism
112
Homo sapiens
Biosample type
61
cell line
44
tissue
8
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
69
GRCh38
68
hg19
Lab
86
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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