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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
24
Transcription
5
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
205
bam
183
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
26
tsv
13
fastq
11
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
238
tissue
8
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
181
GRCh38
134
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
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