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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 218DNA binding
  • 24Transcription
  • 5DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 28May, 2019
  • 18July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 1February, 2023
Available data
  • 211bam
  • 190bigWig
  • 171bed narrowPeak
  • 118tagAlign
  • 95bigBed narrowPeak
  • 26tsv
  • 19fastq
  • 15bed broadPeak
  • 6bigBed broadPeak
  • 3bed bed3+
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 254Homo sapiens
Biosample type
  • 238tissue
  • 16primary cell
Organ
  • 938pancreas
  • 785liver
  • 675connective tissue
  • 505epithelium
  • 489adipose tissue
  • 363heart
  • 273kidney
  • 254brain
  • 225vasculature
  • 221blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 63musculature of body
  • 57eye
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 254AMP
Genome assembly (visualization)
  • 185GRCh38
  • 142hg19
Lab
  • 254AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

254 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain20111
layer of hippocampus23
substantia nigra161
temporal lobe1511
caudate nucleus151
primary cell
astrocyte of the cerebellum31
brain microvascular endothelial cell31
choroid plexus epithelial cell31
cerebellar granule cell2
Purkinje cell1
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