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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
2
pCHi-C
1
WGBS
Assay category
70
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
17
control
Date released
69
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
March, 2020
Available data
78
bam
56
bed narrowPeak
55
bigWig
48
bigBed narrowPeak
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
92
Homo sapiens
Biosample type
92
tissue
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
5
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