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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
184
total RNA-seq
23
ATAC-seq
7
WGBS
DNase-seq
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
553
DNA binding
188
Transcription
23
DNA accessibility
8
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
342
transcription factor
114
control
94
histone modification
93
histone
82
recombinant protein
56
RNA binding protein
55
narrow histone mark
38
broad histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
194
May, 2020
58
November, 2018
53
August, 2017
48
December, 2017
40
May, 2022
31
August, 2021
12
January, 2019
8
December, 2018
8
July, 2019
6
October, 2019
4
March, 2020
3
February, 2021
1
February, 2020
1
October, 2017
Available data
674
bam
609
bigWig
470
fastq
431
bed narrowPeak
351
bigBed narrowPeak
170
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
4
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
782
Homo sapiens
Biosample type
401
cell line
381
tissue
Organ
938
pancreas
785
liver
675
connective tissue
epithelium
489
adipose tissue
363
heart
273
kidney
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
782
AMP
Genome assembly (visualization)
608
hg19
518
GRCh38
Lab
711
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
organ_slims!
brain
epithelium
BIOSAMPLE
ASSAY
782 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
145
167
20
3
1
1
1
1
1
spleen
20
1
2
1
right lobe of liver
10
3
1
1
2
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