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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
608
ChIP-seq
168
DNase-seq
43
ATAC-seq
16
small RNA-seq
WGBS
6
single cell RNA-seq
FAIRE-seq
Assay category
917
Transcription
608
DNA binding
211
DNA accessibility
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
86
transcription factor
27
RNA binding protein
2
chromatin remodeller
Date released
444
February, 2021
175
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
53
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1867
bam
1736
bigWig
1076
tsv
964
bed narrowPeak
541
bigBed narrowPeak
346
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1730
Homo sapiens
Biosample type
1736
tissue
612
primary cell
465
cell line
259
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
365
pancreas
258
liver
199
brain
151
heart
90
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
56
musculature of body
31
nerve
27
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
1734
AMP
2
T1D
Genome assembly (visualization)
1680
GRCh38
1627
hg19
Lab
1675
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
WGBS
month_released!
November, 2018
BIOSAMPLE
ASSAY
1736 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
260
29
1
3
6
liver
147
78
20
1
bone tissue
58
left cardiac atrium
40
1
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