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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
956
total RNA-seq
880
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
85
RNA microarray
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
FAIRE-seq
Assay category
1087
Transcription
880
DNA binding
317
DNA accessibility
15
3D chromatin structure
10
DNA methylation
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
274
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
66
May, 2022
60
July, 2019
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1789
bam
1662
bigWig
1039
tsv
828
bed narrowPeak
471
bigBed narrowPeak
365
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
10
bedpe bed3+
10
hic
8
bed bedMethyl
8
bigBed bedMethyl
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2414
Homo sapiens
Biosample type
2423
tissue
1004
primary cell
642
cell line
394
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
498
pancreas
480
adipose tissue
356
liver
302
heart
kidney
252
brain
158
bone element
128
blood vessel
128
vasculature
118
limb
79
musculature of body
71
artery
55
eye
42
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2373
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1678
GRCh38
1660
hg19
Lab
2260
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
WGBS
month_released!
February, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
2423 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
4
adipose tissue
382
2
3
1
liver
167
145
20
1
2
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
1
1
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