Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
WGBS
FAIRE-seq
Assay category
134
DNA binding
89
Transcription
9
DNA accessibility
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
567
February, 2021
283
May, 2020
273
May, 2021
242
October, 2019
232
August, 2017
214
June, 2019
164
July, 2018
149
November, 2017
115
May, 2019
73
April, 2019
72
September, 2018
71
July, 2019
61
October, 2018
58
November, 2019
52
December, 2017
49
April, 2018
49
August, 2021
39
February, 2018
24
May, 2022
16
January, 2019
16
March, 2020
15
November, 2018
15
October, 2017
11
September, 2017
6
December, 2018
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
235
fastq
232
bam
222
bigWig
117
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
14
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
225
Homo sapiens
Biosample type
144
tissue
56
primary cell
32
in vitro differentiated cells
Organ
160
pancreas
35
connective tissue
29
epithelium
22
liver
3
adipose tissue
Project
232
AMP
Genome assembly (visualization)
204
hg19
201
GRCh38
Lab
232
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
WGBS
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
232 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
15
89
1
liver
21
pancreas
14
adipose tissue
2
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
31
1
See all biosamples
Download