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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
1
whole genome sequencing assay
Assay category
7
DNA accessibility
1
DNA sequencing
Date released
4
February, 2021
3
February, 2023
1
August, 2021
Available data
3387
bam
3164
bigWig
1812
bed narrowPeak
1600
tsv
1356
fastq
1037
bigBed narrowPeak
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
cell line
Organ
4
connective tissue
1
liver
Project
8
AMP
Genome assembly (visualization)
7
hg19
Lab
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
shRNA RNA-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
whole genome sequencing assay
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
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