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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
872
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
872
DNA binding
288
DNA accessibility
196
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
179
August, 2021
168
August, 2017
115
May, 2019
101
February, 2021
82
February, 2023
80
April, 2019
76
November, 2017
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
44
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
21
November, 2019
19
April, 2020
19
October, 2017
16
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
1002
bam
980
bed narrowPeak
873
bigWig
557
bigBed narrowPeak
278
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1526
Homo sapiens
Biosample type
1529
tissue
791
primary cell
490
cell line
257
in vitro differentiated cells
10
stem cell
Organ
271
heart
211
brain
200
pancreas
188
liver
180
kidney
121
blood vessel
121
vasculature
96
bone element
89
connective tissue
88
adipose tissue
79
limb
67
artery
36
nerve
34
eye
32
musculature of body
24
spleen
20
lung
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1439
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
772
GRCh38
659
hg19
Lab
1261
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
FAIRE-seq
total RNA-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1529 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
27
75
64
6
1
1
liver
145
20
1
3
1
1
1
1
islet of Langerhans
65
66
6
7
4
3
1
4
1
bone element
84
heart left ventricle
35
2
18
4
1
1
1
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