Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
75
single cell RNA-seq
72
ChIP-seq
51
ATAC-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
FAIRE-seq
Assay category
170
Transcription
84
DNA accessibility
72
DNA binding
52
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
February, 2021
17
August, 2017
13
July, 2019
11
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
135
fastq
48
bigWig
37
bam
33
bed narrowPeak
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
hdf5
3
bigBed narrowPeak
3
cool
2
csv
2
tagAlign
Organism
403
Homo sapiens
Biosample type
790
tissue
403
primary cell
193
cell line
125
in vitro differentiated cells
7
stem cell
Organ
174
epithelium
148
pancreas
14
vasculature
12
blood vessel
9
vein
8
blood
8
bodily fluid
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
269
HPAP
110
AMP
24
T1D
Genome assembly (visualization)
534
hg19
GRCh38
Lab
269
Klaus Kaestner, Upenn
75
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
4
audit script error
assay_title!
FAIRE-seq
assembly!
GRCh38
month_released!
February, 2021
May, 2020
BIOSAMPLE
ASSAY
403 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
42
6
22
25
1
Langerhans cell
73
21
pancreatic beta cell
11
6
13
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
+ See 40 more…
See all biosamples
Download