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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ChIP-seq
174
single cell RNA-seq
104
total RNA-seq
87
RNA microarray
72
ATAC-seq
28
snATAC-seq
19
pCHi-C
16
Hi-C
11
WGBS
10
RRBS
4
MeRIP-seq
FAIRE-seq
3
snDrop-seq
1
DNase-seq
Assay category
278
Transcription
271
DNA binding
101
DNA accessibility
21
DNA methylation
16
3D chromatin structure
Target of assay
159
control
113
histone
113
histone modification
61
narrow histone mark
52
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
125
August, 2017
93
February, 2021
66
May, 2022
52
October, 2019
47
September, 2023
31
May, 2020
29
March, 2020
29
October, 2018
28
February, 2023
20
May, 2019
19
April, 2020
16
April, 2019
13
July, 2019
12
December, 2017
12
February, 2020
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
November, 2018
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
176
bam
157
txt
140
tsv
92
fastq
86
tagAlign
69
bed narrowPeak
55
bigWig
21
bed broadPeak
11
hic
10
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
csv
4
bed bed3
2
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
797
Homo sapiens
Biosample type
800
tissue
542
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
133
kidney
123
liver
122
heart
117
pancreas
92
bone element
67
connective tissue
66
adipose tissue
brain
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
705
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1579
hg19
Lab
566
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
9
audit script error
assay_title!
FAIRE-seq
assembly!
GRCh38
organ_slims!
brain
eye
BIOSAMPLE
ASSAY
800 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
44
18
44
7
3
1
4
liver
70
1
20
20
1
1
3
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
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