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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
single cell RNA-seq
5
Hi-C
2
total RNA-seq
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
20
DNA binding
8
Transcription
5
3D chromatin structure
1
DNA methylation
Target of assay
17
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
October, 2019
9
May, 2019
6
August, 2021
3
July, 2019
3
March, 2020
2
February, 2020
1
November, 2017
Available data
23
bam
9
tsv
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
bigBed broadPeak
2
hdf5
1
fastq
Organism
35
Homo sapiens
Biosample type
25
tissue
10
primary cell
Organ
309
pancreas
246
liver
227
epithelium
148
kidney
heart
118
connective tissue
93
bone element
68
brain
67
adipose tissue
55
eye
43
musculature of body
42
vasculature
40
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
76
hg19
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
assembly!
GRCh38
files.file_type!
bigBed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
5
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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