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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
total RNA-seq
61
ChIP-seq
47
WGBS
11
snATAC-seq
8
Hi-C
2
Capture-C
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
104
DNA accessibility
73
Transcription
61
DNA binding
49
DNA methylation
8
3D chromatin structure
Target of assay
46
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
Date released
104
May, 2022
56
February, 2023
35
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
112
fastq
80
zippedFastqFolder
66
bam
24
bed narrowPeak
11
tagAlign
11
tsv
10
bigWig
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
Organism
297
Homo sapiens
Biosample type
154
primary cell
113
tissue
31
cell line
1
in vitro differentiated cells
Organ
299
pancreas
260
liver
223
epithelium
148
kidney
127
heart
118
connective tissue
93
bone element
68
brain
67
adipose tissue
55
eye
44
vasculature
43
musculature of body
42
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
129
AMP
28
T1D
Genome assembly (visualization)
656
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
101
AMP-T2D consortium
51
Kyle Gaulton, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
23
inconsistent ontology term
4
audit script error
assay_title!
FAIRE-seq
assembly!
GRCh38
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
spleen
BIOSAMPLE
ASSAY
299 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
25
7
3
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
18
2
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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