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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
15
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
15
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
202
August, 2021
200
May, 2022
170
February, 2023
144
February, 2021
114
May, 2021
113
August, 2017
111
May, 2020
67
October, 2019
56
September, 2020
55
November, 2017
48
March, 2020
47
September, 2023
27
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
8
January, 2018
6
October, 2017
5
December, 2019
5
November, 2020
4
July, 2018
4
March, 2023
4
October, 2022
3
March, 2019
3
May, 2023
2
April, 2019
2
November, 2018
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
May, 2019
1
September, 2018
Available data
108
tsv
57
txt
16
bed narrowPeak
16
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
201
Homo sapiens
Biosample type
165
tissue
32
cell line
5
in vitro differentiated cells
Organ
92
heart
66
kidney
27
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
202
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
102
AMP-T2D consortium
64
Katalin Susztak, Upenn
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
FAIRE-seq
assembly!
GRCh38
target.investigated_as!
control
BIOSAMPLE
ASSAY
202 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
14
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
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