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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
704
ChIP-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
FAIRE-seq
3
snDrop-seq
Assay category
1138
Transcription
704
DNA binding
458
DNA accessibility
24
DNA methylation
15
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
44
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
25
November, 2018
23
October, 2017
21
December, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1706
bam
1564
bigWig
987
tsv
888
bed narrowPeak
509
bigBed narrowPeak
186
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
173
fastq
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2456
Homo sapiens
Biosample type
2458
tissue
1028
primary cell
661
cell line
326
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
352
pancreas
313
heart
298
kidney
280
liver
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2361
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1672
GRCh38
1542
hg19
Lab
2111
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
FAIRE-seq
audit.ERROR.category!
inconsistent control
month_released!
August, 2017
March, 2019
BIOSAMPLE
ASSAY
2458 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
64
6
7
4
2
1
4
liver
167
70
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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